miRBase entry: mmu-mir-144

Stem-loop mmu-mir-144


Accession
MI0000168
Symbol
MGI: Mir144
Description
Mus musculus mmu-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144

Literature search
69 open access papers mention mmu-mir-144
(928 sentences)

Sequence

214805 reads, 2033 reads per million, 78 experiments
ggcugGGAUAUCAUCAUAUACUGUAAGUuugugaugagacacUACAGUAUAGAUGAUGUACUaguc
((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).))))))

Structure
      G        A         -A    gu 
ggcugG AUAUCAUC UAUACUGUA  GUuu  g
|||||| |||||||| |||||||||  ||||   
cugaUC UGUAGUAG AUAUGACAU  caga  a
      A        -         ca    gu 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
chr11: 78073005-78073070 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-144-5p

Accession MIMAT0016988
Description Mus musculus mmu-miR-144-5p mature miRNA
Sequence 6 - GGAUAUCAUCAUAUACUGUAAGU - 28
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-144-3p

Accession MIMAT0000156
Description Mus musculus mmu-miR-144-3p mature miRNA
Sequence 43 - UACAGUAUAGAUGAUGUACU - 62
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009