miRBase entry: mmu-mir-146a

Stem-loop mmu-mir-146a


Accession
MI0000170
Symbol
MGI: Mir146
Description
Mus musculus mmu-mir-146a precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
364 open access papers mention mmu-mir-146a
(4575 sentences)

Sequence

175869 reads, 448 reads per million, 104 experiments
agcucUGAGAACUGAAUUCCAUGGGUUauaucaaugucagaCCUGUGAAAUUCAGUUCUUCAGcu
((((..((((((((((((.((((((((............)))))))).)))))))))))).))))

Structure
    cU            C        auauc 
agcu  GAGAACUGAAUU CAUGGGUU     a
||||  |||||||||||| ||||||||      
ucGA  UUCUUGACUUAA GUGUCCag     a
    -C            A        acugu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr11: 43374397-43374461 [-]

Database links

Mature mmu-miR-146a-5p

Accession MIMAT0000158
Description Mus musculus mmu-miR-146a-5p mature miRNA
Sequence 6 - UGAGAACUGAAUUCCAUGGGUU - 27
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-146a-3p

Accession MIMAT0016989
Description Mus musculus mmu-miR-146a-3p mature miRNA
Sequence 42 - CCUGUGAAAUUCAGUUCUUCAG - 63
Evidence experimental
Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009