Stem-loop sequence mmu-mir-146a

Accession

MI0000170 (change log)

Previous IDs

mmu-mir-146

Symbol

MGI:Mir146

Description

Mus musculus miR-146a stem-loop

Gene family

MIPF0000103; mir-146

Literature search

364 open access papers mention mmu-mir-146a
(4521 sentences)

Stem-loop

       cu            c        auauc 
5' agcu  gagaacugaauu cauggguu     a
   ||||  |||||||||||| ||||||||      
3' ucga  uucuugacuuaa guguccag     a
       -c            a        acugu 

Deep sequencing

709159 reads, 1.23e+03 reads per million, 111 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 43374397-43374461 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir146
• MGI:Mir146
• RNAcentral:URS000075DF9E_10090
• miRBase Tracker:MI0000170

Mature sequence mmu-miR-146a-5p

• Accession: MIMAT0000158
• Previous IDs: mmu-miR-146;mmu-miR-146a
• Sequence: 6 - ugagaacugaauuccauggguu - 27
• Deep sequencing: 709100 reads, 112 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000050B527_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-146a-5p
  • miRDB:mmu-miR-146a-5p
  • microrna.org:mmu-miR-146a-5p

Mature sequence mmu-miR-146a-3p

• Accession: MIMAT0016989
• Previous IDs: mmu-miR-146a*
• Sequence: 42 - ccugugaaauucaguucuucag - 63
• Deep sequencing: 59 reads, 25 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS0000121576_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-146a-3p
  • miRDB:mmu-miR-146a-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).