miRBase entry: mmu-mir-150

Stem-loop mmu-mir-150


Accession
MI0000172
Symbol
MGI: Mir150
Description
Mus musculus mmu-mir-150 precursor miRNA
Gene family
MIPF0000197; mir-150

Literature search
162 open access papers mention mmu-mir-150
(1594 sentences)

Sequence

185945 reads, 745 reads per million, 100 experiments
cccugUCUCCCAACCCUUGUACCAGUGcugugccucagaccCUGGUACAGGCCUGGGGGAUAGgg
((((((((((((..(((.(((((((.((((.....))).).))))))))))..))))))))))))

Structure
            AC   U       U -   u 
cccugUCUCCCA  CCU GUACCAG G cug g
||||||||||||  ||| ||||||| | ||| c
ggGAUAGGGGGU  GGA CAUGGUC c gac c
            CC   -       c a   u 


Annotation confidence High
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Genome context
chr7: 45121757-45121821 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-150
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-150-5p

Accession MIMAT0000160
Description Mus musculus mmu-miR-150-5p mature miRNA
Sequence 6 - UCUCCCAACCCUUGUACCAGUG - 27
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-150-3p

Accession MIMAT0004535
Description Mus musculus mmu-miR-150-3p mature miRNA
Sequence 42 - CUGGUACAGGCCUGGGGGAUAG - 63
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009