miRBase entry: mmu-mir-183

Stem-loop mmu-mir-183


Accession
MI0000225
Symbol
MGI: Mir183
Description
Mus musculus mmu-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
106 open access papers mention mmu-mir-183
(972 sentences)

Sequence

419257 reads, 749 reads per million, 98 experiments
cugugUAUGGCACUGGUAGAAUUCACUgugaacagucucagucaGUGAAUUACCGAAGGGCCAUAAacag
((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))

Structure
    g      A  --    GA        --   ac 
cugu UAUGGC CU  GGUA  AUUCACUg  uga  a
|||| |||||| ||  ||||  ||||||||  |||   
gaca AUACCG GA  CCAU  UAAGUGac  acu  g
    A      G  AG    --        ug   cu 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context
chr6: 30169668-30169737 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-183-5p

Accession MIMAT0000212
Description Mus musculus mmu-miR-183-5p mature miRNA
Sequence 6 - UAUGGCACUGGUAGAAUUCACU - 27
Evidence experimental
cloned [1-3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-183-3p

Accession MIMAT0004539
Description Mus musculus mmu-miR-183-3p mature miRNA
Sequence 45 - GUGAAUUACCGAAGGGCCAUAA - 66
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  3. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  4. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  5. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009