Stem-loop sequence hsa-mir-197

Accession

MI0000239 (change log)

Symbol

HGNC:MIR197

Description

Homo sapiens miR-197 stem-loop

Gene family

MIPF0000123; mir-197

Literature search

71 open access papers mention hsa-mir-197
(290 sentences)

Stem-loop

           c    a       ca    ga   -   a 
5' ggcugugc gggu gagaggg  gugg  ggu aag g
   |||||||| |||| |||||||  ||||  ||| |||  
3' ccgguacg ccca cucuucc  cacu  cca uuc c
           a    c       ac    uc   c   u 

Deep sequencing

84625 reads, 196 reads per million, 159 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 109598893-109598967 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR197
• HGNC:MIR197
• RNAcentral:URS00000F4AC3_9606
• miRBase Tracker:MI0000239

Mature sequence hsa-miR-197-5p

• Accession: MIMAT0022691
• Sequence: 9 - cggguagagagggcagugggagg - 31
• Deep sequencing: 974 reads, 74 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000020E2DD_9606
• Predicted targets:
  • TargetMiner:hsa-miR-197-5p
  • TargetScanVert:hsa-miR-197-5p
  • miRDB:hsa-miR-197-5p

Mature sequence hsa-miR-197-3p

• Accession: MIMAT0000227
• Previous IDs: hsa-miR-197
• Sequence: 48 - uucaccaccuucuccacccagc - 69
• Deep sequencing: 83633 reads, 159 experiments
• Evidence: experimental; cloned [1-3]
• Database links:
  • RNAcentral:URS000061E740_9606
• Predicted targets:
  • TargetMiner:hsa-miR-197-3p
  • TargetScanVert:hsa-miR-197-3p
  • miRDB:hsa-miR-197-3p
  • microrna.org:hsa-miR-197-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).