miRBase entry: mmu-mir-201

Stem-loop mmu-mir-201


Accession
MI0000244
Symbol
MGI: Mir201
Description
Mus musculus mmu-mir-201 precursor miRNA
Gene family
MIPF0000386; mir-743

Literature search
5 open access papers mention mmu-mir-201
(10 sentences)

Sequence

3415 reads, 470 reads per million, 45 experiments
uaccuUACUCAGUAAGGCAUUGUUCUUcuauauuaauaaaUGAACAGUGCCUUUCUGUGUAGGgua
((((((((.(((.((((((((((((...(((....)))...)))))))))))).))).))))))))

Structure
        U   U            UUc   a 
uaccuUAC CAG AAGGCAUUGUUC   uau u
|||||||| ||| ||||||||||||   |||  
augGGAUG GUC UUCCGUGACAAG   aua u
        U   U            Uaa   a 


Annotation confidence High
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Genome context
chrX: 67988096-67988161 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-201
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-201-5p

Accession MIMAT0000234
Description Mus musculus mmu-miR-201-5p mature miRNA
Sequence 6 - UACUCAGUAAGGCAUUGUUCUU - 27
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-201-3p

Accession MIMAT0017001
Description Mus musculus mmu-miR-201-3p mature miRNA
Sequence 41 - UGAACAGUGCCUUUCUGUGUAGG - 63
Evidence experimental
Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009