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miRBase |
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Stem-loop sequence cel-mir-252 |
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Accession | MI0000328 (change log) | ||||
Description | Caenorhabditis elegans miR-252 stem-loop | ||||
Gene family | MIPF0000285; mir-252 | ||||
Literature search |
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2 open access papers mention cel-mir-252 | ||||
Stem-loop |
uccaggg --uc a u u c c cc agu 5' guc uuucaguu uaaguag ag gc g agguaa gcc c ||| |||||||| ||||||| || || | |||||| ||| u 3' uag aaaguuaa auucguc uc cg c uccauu cgg a ------g uuau a u - u a -- aaa |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2]. |
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Genome context |
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Database links |
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Mature sequence cel-miR-252-5p |
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Accession | MIMAT0000308 |
Previous IDs | cel-miR-252 |
Sequence |
21 - auaaguaguagugccgcagguaa - 43 |
Deep sequencing | 96624 reads, 17 experiments |
Evidence | experimental; Northern [1-2], PCR [1], Illumina [3,5], CLIPseq [4] |
Database links |
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Predicted targets |
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Mature sequence cel-miR-252-3p |
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Accession | MIMAT0020340 |
Previous IDs | cel-miR-252* |
Sequence |
60 - cuuaccuacugccuucugc - 78 |
Deep sequencing | 134 reads, 13 experiments |
Evidence | experimental; Illumina [5] |
Database links |
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References |
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1 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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2 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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5 |