miRBase entry: cel-mir-252

Stem-loop cel-mir-252


Accession
MI0000328
Description
Caenorhabditis elegans cel-mir-252 precursor miRNA
Gene family
MIPF0000285; mir-252

Literature search
2 open access papers mention cel-mir-252
(47 sentences)

Sequence

72170 reads, 448 reads per million, 16 experiments
uccaggggucucuuucaguuAUAAGUAGUAGUGCCGCAGGUAAccgccagucuaaaaggCUUACCUACUGCCUUCUGCuuaaaauugaaauauugaug
.......(((..((((((((.(((((((.((.((.(.((((((..(((.........))))))))).).)))).))))))).))))))))....))).

Structure
uccaggg   --uc        A       U  U  C C      cc   agu 
       guc    uuucaguu UAAGUAG AG GC G AGGUAA  gcc   c
       |||    |||||||| ||||||| || || | ||||||  |||   u
       uag    aaaguuaa auuCGUC UC CG C UCCAUU  Cgg   a
------g   uuau        a       U  -  U A      --   aaa 


Annotation confidence High
Do you think this miRNA is real?
Comments
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].

Genome context
chrII: 11446863-11446960 [-]

Database links

Mature cel-miR-252-5p

Accession MIMAT0000308
Description Caenorhabditis elegans cel-miR-252-5p mature miRNA
Sequence 21 - AUAAGUAGUAGUGCCGCAGGUAA - 43
Evidence experimental
Northern [1-2], PCR [1], Illumina [3,5], CLIPseq [4]
Database links
Predicted targets

Mature cel-miR-252-3p

Accession MIMAT0020340
Description Caenorhabditis elegans cel-miR-252-3p mature miRNA
Sequence 60 - CUUACCUACUGCCUUCUGC - 78
Evidence experimental
Illumina [5]
Database links

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  3. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  4. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179

  5. PubMed ID: 21307183
    Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
    "Warf MB, Johnson WE, Bass BL"
    "RNA (2011) 17:563-577