miRBase entry: cel-mir-265

Stem-loop cel-mir-265


Accession
MI0000345
Description
Caenorhabditis elegans cel-mir-265 precursor miRNA

Literature search
2 open access papers mention cel-mir-265
(2 sentences)

Sequence

gguuugacuuacccccuccuuccgcuggccgccguuuuuauuaugaacuugaugugguuUGAGGGAGGAAGGGUGGUAUuugaacc
(((((((..((((((((((((((.(.((((((.((((.......)))).....)))))).).)))))).)))).)))).)))))))

Structure
       cu    -    -      g u      ----c    uu 
gguuuga  uacc cccu ccuucc c ggccgc     guuu  a
|||||||  |||| |||| |||||| | ||||||     ||||  u
ccaaguu  AUGG GGGA GGAGGG G uuggug     caag  u
       -U    U    A      A U      uaguu    ua 


Annotation confidence Not enough data
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Comments
This precursor sequence was predicted by comparative computational approaches. The excised miRNA sequence is predicted and the precise 5' or 3' end unknown. A PCR amplification protocol confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context
chrIV: 12740443-12740528 [-]

Database links

Mature cel-miR-265

Accession MIMAT0000321
Description Caenorhabditis elegans cel-miR-265 mature miRNA
Sequence 60 - UGAGGGAGGAAGGGUGGUAU - 79
Evidence experimental
PCR [1]

References

  1. PubMed ID: 12769849
    Computational and experimental identification of C. elegans microRNAs
    "Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J"
    "Mol Cell (2003) 11:1253-1263