miRBase entry: mmu-mir-290a

Stem-loop mmu-mir-290a


Accession
MI0000388
Symbol
MGI: Mir290a
Description
Mus musculus mmu-mir-290a precursor miRNA
Gene family
MIPF0000068; mir-290

Literature search
54 open access papers mention mmu-mir-290a
(433 sentences)

Sequence

45683 reads, 1905 reads per million, 33 experiments
cucaucuugcgguACUCAAACUAUGGGGGCACUUUuuuuuuucuuuaaAAAGUGCCGCCUAGUUUUAAGCCCcgccgguugag
((((.((.((((..((.((((((.((.((((((((((.........)))))))))).))))))))..))..)))).)).))))

Structure
    u  u    uA  -C      U  G          uuu 
cuca cu gcgg  CU  AAACUA GG GGCACUUUuu   u
|||| || ||||  ||  |||||| || ||||||||||   u
gagu gg cgcC  GA  UUUGAU CC CCGUGAAAaa   c
    u  c    CC  AU      -  G          uuu 


Annotation confidence High
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Genome context
chr7: 3218626-3218708 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from mmu-mir-290a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-290a-5p

Accession MIMAT0000366
Description Mus musculus mmu-miR-290a-5p mature miRNA
Sequence 14 - ACUCAAACUAUGGGGGCACUUU - 35
Evidence experimental
cloned [1-2], Northern [1], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-290a-3p

Accession MIMAT0004572
Description Mus musculus mmu-miR-290a-3p mature miRNA
Sequence 49 - AAAGUGCCGCCUAGUUUUAAGCCC - 72
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009