miRBase entry: mmu-mir-291a

Stem-loop mmu-mir-291a


Accession
MI0000389
Symbol
MGI: Mir291a
Description
Mus musculus mmu-mir-291a precursor miRNA
Gene family
MIPF0000068; mir-290

Literature search
24 open access papers mention mmu-mir-291a
(93 sentences)

Sequence

57969 reads, 2066 reads per million, 54 experiments
ccuauguagcggcCAUCAAAGUGGAGGCCCUCUCUugagccugaaugagAAAGUGCUUCCACUUUGUGUGCcacugcauggg
(((((((((.(((((.((((((((((((.((.(((((........))))).)).)))))))))))))).))).)))))))))

Structure
         c   -  U            C  C     agc 
ccuauguag ggc CA CAAAGUGGAGGC CU UCUug   c
||||||||| ||| || |||||||||||| || |||||    
ggguacguc cCG GU GUUUCACCUUCG GA Agagu   u
         a   U  -            U  A     aag 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
chr7: 3218919-3219000 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from mmu-mir-291a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-291a-5p

Accession MIMAT0000367
Description Mus musculus mmu-miR-291a-5p mature miRNA
Sequence 14 - CAUCAAAGUGGAGGCCCUCUCU - 35
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-291a-3p

Accession MIMAT0000368
Description Mus musculus mmu-miR-291a-3p mature miRNA
Sequence 50 - AAAGUGCUUCCACUUUGUGUGC - 71
Evidence experimental
cloned [1-2], Northern [1], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009