miRBase entry: cbr-mir-43

Stem-loop cbr-mir-43


Accession
MI0000496
Description
Caenorhabditis briggsae cbr-mir-43 precursor miRNA
Gene family
MIPF0000234; mir-43

Literature search
1 open access papers mention cbr-mir-43
(2 sentences)

Sequence

aggcgauucugcccgugacaucaagaugcuugugauuaugcgaaaauguugggacaUAUCACAGUUUACUUGCUGUCGCaggcggauuauugcua
.((((((((((((.((((((.(((((.(((.(((((.((((...........).))))))))))).).)))).)))))).))))))..)))))).

Structure
a      --      c      u    - u   u     u   - gaaa 
 ggcgau  ucugcc gugaca caag a gcu gugau aug c    a
 ||||||  |||||| |||||| |||| | ||| ||||| ||| |    u
 ucguua  aggcgg CGCUGU GUUC U UGA CACUA Uac g    g
a      uu      a      C    A U   -     -   a gguu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrII: 8891204-8891298 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cbr-mir-43
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-43

Accession MIMAT0000468
Description Caenorhabditis briggsae cbr-miR-43 mature miRNA
Sequence 57 - UAUCACAGUUUACUUGCUGUCGC - 79
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862