Stem-loop cbr-mir-46

Accession

MI0000500

Description

Caenorhabditis briggsae cbr-mir-46 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

gagauacaagugaagcugaagagagccgucuauugacaguucgcuuguuucaugugcUGUCAUGGAGUCGCUCUCUUCAgaugaucugaaucua
.((((.((.((....(((((((((((..(((((.((((((..((.((...)).)))))))))))))...)))))))))))...)).)).)))).

Structure

g    a  a  gaag           -cg     u      uc  u  u 
 agau ca gu    cugaagagagc   ucuau gacagu  gc ug  
 |||| || ||    |||||||||||   ||||| ||||||  || || u
 ucua gu ua    gACUUCUCUCG   AGGUA CUGUcg  ug ac  
a    a  c  -gua           CUG     -      --  u  u 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIII: 5569417-5569510 [-]

Mature cbr-miR-46

• Accession: MIMAT0000471
• Description: Caenorhabditis briggsae cbr-miR-46 mature miRNA
• Sequence: 58 - UGUCAUGGAGUCGCUCUCUUCA - 79
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862