miRBase entry: cbr-mir-47

Stem-loop cbr-mir-47


Accession
MI0000501
Description
Caenorhabditis briggsae cbr-mir-47 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

uagcugaggaagacugaagggagcuuucuuuugacaguucgauuucgaacucuuacUGUCAUGGAGGCGCUCUCUUCAggugaacucuggcuc
.(((((((.....((((((((((((((((..(((((((..((........))..))))))).))))).))))))))))).....))).)))).

Structure
u    -   gaaga           -     uu       uc  uuu 
 agcu gag     cugaagggagc uuucu  ugacagu  ga   c
 |||| |||     ||||||||||| |||||  |||||||  ||    
 ucgg cuc     gACUUCUCUCG GGAGG  ACUGUca  cu   g
c    u   aagug           C     -U       uu  caa 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrX: 19747134-19747226 [+]

Database links

Mature cbr-miR-47

Accession MIMAT0000472
Description Caenorhabditis briggsae cbr-miR-47 mature miRNA
Sequence 57 - UGUCAUGGAGGCGCUCUCUUCA - 78
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862