miRBase entry: cbr-mir-48

Stem-loop cbr-mir-48


Accession
MI0000502
Description
Caenorhabditis briggsae cbr-mir-48 precursor miRNA
Gene family
MIPF0000235; mir-48


Sequence

agaaccauucgggauguUGAGGUAGGCUCAGUAGAUGCGAggagauccaccauuccucacaucgucuguccuaacucgccuucccuugugcuuca
.(((.(((..((((.(.((((.((((..(((..((((.((((((........)))))).))))..))).)))).)))).).))))..))).))).

Structure
a   c   uc    u u    G    CU   UA    C      auc 
 gaa cau  ggga g UGAG UAGG  CAG  GAUG GAggag   c
 ||| |||  |||| | |||| ||||  |||  |||| ||||||    
 cuu gug  cccu c gcuc aucc  guc  cuac cuccuu   a
a   c   uu    u c    a    -u   ug    a      acc 


Annotation confidence Not enough data
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Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrV: 14733130-14733224 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-48
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-48

Accession MIMAT0000473
Description Caenorhabditis briggsae cbr-miR-48 mature miRNA
Sequence 18 - UGAGGUAGGCUCAGUAGAUGCGA - 40
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862