miRBase entry: cbr-mir-49

Stem-loop cbr-mir-49


Accession
MI0000503
Description
Caenorhabditis briggsae cbr-mir-49 precursor miRNA
Gene family
MIPF0000237; mir-49


Sequence

accgaaaccauuugccauccgcaguuuuuuguagugugcuccgcgccaucuuagugcccgAAGCACCACGAGAAGCUGCAGAuggaaguuuugguu
((((((((......(((((.((((((((((((.(.(((((.((.(((......).)).)).)))))))))))))))))).)))))..)))))))).

Structure
-        cauuug     c            a u     c  c  - au 
 accgaaac      ccauc gcaguuuuuugu g gugcu cg gc c  c
 ||||||||      ||||| |||||||||||| | ||||| || || |   
 ugguuuug      gguAG CGUCGAAGAGCA C CACGA gc cg g  u
u        ----aa     A            - -     A  c  u au 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrX: 3523210-3523305 [-]

Database links

Mature cbr-miR-49

Accession MIMAT0000474
Description Caenorhabditis briggsae cbr-miR-49 mature miRNA
Sequence 61 - AAGCACCACGAGAAGCUGCAGA - 82
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862