miRBase entry: cbr-mir-50

Stem-loop cbr-mir-50


Accession
MI0000504
Description
Caenorhabditis briggsae cbr-mir-50 precursor miRNA
Gene family
MIPF0000266; mir-50


Sequence

uuccacccaccggccgcUGAUAUGUCUGAUAUUCUUGGGUUaucugauaaugauuguuguaacucaaguauuagacguaucgacggccggcuggguuggaa
.(((((((((((((((.((((((((((((((..((((((((((..(((((...))))))))))))))))))))))))))))).))))))).)))).)))).

Structure
u    -    -       c              UU          cu     u 
 ucca ccca ccggccg UGAUAUGUCUGAUA  CUUGGGUUau  gauaa  
 |||| |||| ||||||| ||||||||||||||  ||||||||||  ||||| g
 aggu gggu ggccggc gcuaugcagauuau  gaacucaaug  uuguu  
a    u    c       a              --          --     a 


Annotation confidence Not enough data
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Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context
chrI: 2597949-2598049 [+]

Database links

Mature cbr-miR-50

Accession MIMAT0000475
Description Caenorhabditis briggsae cbr-miR-50 mature miRNA
Sequence 18 - UGAUAUGUCUGAUAUUCUUGGGUU - 41
Evidence not_experimental

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862