Stem-loop sequence cbr-mir-60

Accession

MI0000509 (change log)

Description

Caenorhabditis briggsae miR-60 stem-loop

Gene family

MIPF0000298; mir-60

Stem-loop

   u     ag        -   a     a   a   cc 
5'  ucuug  cuggaaag gug cauaa auc ugu  a
    |||||  |||||||| ||| ||||| ||| |||   
3'  agaac  gaucuuuu cac guauu uag gca  a
   c     cu        a   -     a   c   cg 

Confidence

Annotation confidence: not enough data

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

• Coordinates (CB4; GCA_000004555.3): chrII: 9414183-9414254 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007141CB_6238
• miRBase Tracker:MI0000509

Mature sequence cbr-miR-60

• Accession: MIMAT0000479
• Sequence: 46 - uauuaugcacauuuucuagucca - 68
• Evidence: by similarity; MI0000031

References

1. PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2. PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).