miRNA Entry for MI0000519

Stem-loop sequence cbr-mir-81

Accession

MI0000519 (change log)

Description

Caenorhabditis briggsae miR-81 stem-loop

Gene family

MIPF0000154; mir-81

Literature search

1 open access papers mention cbr-mir-81
(1 sentences)

Stem-loop

   c    -u      uc         cu      g   ---   auaa 
5'  guga  uaacgg  gguuuucac  ugaucu aga   gca    c
    ||||  ||||||  |||||||||  |||||| |||   |||     
3'  cacu  auuguu  ucgaaagug  acuaga ucu   cgu    c
   u    uc      ga         cu      g   auu   aaga

Get sequence

Confidence

Annotation confidence: not enough data

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

Coordinates (CB4; GCA_000004555.3)	Overlapping transcripts
chrX: 4359691-4359780 [-]	intergenic

Clustered miRNAs

< 10kb from cbr-mir-81
cbr-mir-81	chrX: 4359691-4359780 [-]
cbr-mir-82	chrX: 4356766-4356860 [+]

Database links

RNAcentral:URS000079FE4C_6238
miRBase Tracker:MI0000519

Mature sequence cbr-miR-81
Accession	MIMAT0000488
Sequence	57 - ugagaucaucgugaaagcuagu - 78 Get sequence
Evidence	by similarity; MI0000052

References
1	PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).

miRBase

Stem-loop sequence cbr-mir-81

Mature sequence cbr-miR-81

References