Stem-loop cbr-mir-85

Accession

MI0000521

Description

Caenorhabditis briggsae cbr-mir-85 precursor miRNA

Gene family

MIPF0000249; mir-85

Sequence

ccccggugcccgcuuuuucaguaguuugaaaccagagaugauaguugguUACAAAGUAUUUGAAAAGGCGUGCacugggu
.((((((((.(((((((((((((.((((.((((((.........)))))).)))).)).))))))))))).)))))))).

Structure

c        c           -  g    a      aga 
 cccggugc cgcuuuuucag ua uuug aaccag   u
 |||||||| ||||||||||| || |||| ||||||   g
 gggucaCG GCGGAAAAGUU AU AAAC Uugguu   a
u        U           U  G    A      gau 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 3822198-3822277 [-]

Mature cbr-miR-85

• Accession: MIMAT0000490
• Description: Caenorhabditis briggsae cbr-miR-85 mature miRNA
• Sequence: 50 - UACAAAGUAUUUGAAAAGGCGUGC - 73
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862