Stem-loop sequence cbr-mir-86

Accession

MI0000522 (change log)

Description

Caenorhabditis briggsae miR-86 stem-loop

Gene family

MIPF0000247; mir-86

Literature search

1 open access papers mention cbr-mir-86
(2 sentences)

Stem-loop

   c      ----      -           g  uu   a   u     auca 
5'  gaguca    augccg uuuaagugaau cu  gcc cag cuucg    u
    ||||||    |||||| ||||||||||| ||  ||| ||| |||||    g
3'  cucagu    ugcggc ggauucacuua ga  cgg guc gaagu    u
   a      uccu      c           -  uu   -   c     acac 

Confidence

Annotation confidence: not enough data

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

• Coordinates (CB4; GCA_000004555.3): chrIII: 6376870-6376967 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000522

Mature sequence cbr-miR-86

• Accession: MIMAT0000491
• Sequence: 16 - uaagugaaugcuuugccacaguc - 38
• Evidence: by similarity; MI0000057

References

1. PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).