Stem-loop cbr-mir-233

Accession

MI0000530

Description

Caenorhabditis briggsae cbr-mir-233 precursor miRNA

Literature search

1 open access papers mention cbr-mir-233
(1 sentences)

Sequence

2907 reads, 359.0 reads per million, 3 experiments

aagcauuuuucugucCCGCGCAUCCCUUUGUUCCAAUAuucaaaccaguagaaagauuaUUGAGCAAUGCGCAUGUGCGGGAcagauugaauagcug
.(((((((.((((((((((((((.((.((((((.((((.((.............)).)))))))))).).).))))))))))))))..)))).))).

Structure

a   -    -u              C - U      C    u  aaacc 
 agc auuu  ucugucCCGCGCAU C C UUGUUC AAUA uc     a
 ||| ||||  |||||||||||||| | | |||||| |||| ||     g
 ucg uaag  agacAGGGCGUGUA G G AACGAG UUau ag     u
g   a    uu              C C U      -    u  aaaga 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 1737027-1737123 [+]

Mature cbr-miR-233-5p

• Accession: MIMAT0053544
• Description: Caenorhabditis briggsae cbr-miR-233-5p mature miRNA
• Sequence: 16 - CCGCGCAUCCCUUUGUUCCAAUA - 38
• Evidence: not_experimental

Mature cbr-miR-233-3p

• Accession: MIMAT0000498
• Description: Caenorhabditis briggsae cbr-miR-233-3p mature miRNA
• Sequence: 60 - UUGAGCAAUGCGCAUGUGCGGGA - 82
• Evidence: not_experimental

References