Stem-loop sequence cbr-mir-233

Accession

MI0000530 (change log)

Description

Caenorhabditis briggsae miR-233 stem-loop

Gene family

MIPF0000312; mir-233

Literature search

1 open access papers mention cbr-mir-233
(1 sentences)

Stem-loop

   a   -    -u              c - u      c    u  aaacc 
5'  agc auuu  ucugucccgcgcau c c uuguuc aaua uc     a
    ||| ||||  |||||||||||||| | | |||||| |||| ||     g
3'  ucg uaag  agacagggcgugua g g aacgag uuau ag     u
   g   a    uu              c c u      -    u  aaaga 

Confidence

Annotation confidence: not enough data

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

• Coordinates (CB4; GCA_000004555.3): chrX: 1737027-1737123 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000530

Mature sequence cbr-miR-233

• Accession: MIMAT0000498
• Sequence: 60 - uugagcaaugcgcaugugcggga - 82
• Evidence: by similarity; MI0000308