miRBase entry: mmu-mir-148a

Stem-loop mmu-mir-148a


Accession
MI0000550
Symbol
MGI: Mir148a
Description
Mus musculus mmu-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
96 open access papers mention mmu-mir-148a
(852 sentences)

Sequence

1751235 reads, 4983 reads per million, 107 experiments
agccaguuuggucuuuugagacAAAGUUCUGAGACACUCCGACUcugaguaugauagaagUCAGUGCACUACAGAACUUUGUcucuagaggcugugguc
.((((...((((((((.((((((((((((((((.((((..(((((((.......))).))))))))..)).)))))))))))))).)))))))))))).

Structure
a    guu        u              -  -A    CC    -   ag 
 gcca   uggucuuu gagacAAAGUUCUG AG  CACU  GACU cug  u
 ||||   |||||||| |||||||||||||| ||  ||||  |||| |||  a
 uggu   gucggaga cucUGUUUCAAGAC UC  GUGA  CUga gau  u
c    ---        u              A  AC    --    a   ag 


Annotation confidence High
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Comments
This sequence was previsouly named mir-148 here and in [1], but is renamed to avoid confusion with mir-148b (MIR:MI0000617). This sequence maps to mouse chromosome 6.

Genome context
chr6: 51269812-51269910 [-]

Database links

Mature mmu-miR-148a-5p

Accession MIMAT0004617
Description Mus musculus mmu-miR-148a-5p mature miRNA
Sequence 23 - AAAGUUCUGAGACACUCCGACU - 44
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-148a-3p

Accession MIMAT0000516
Description Mus musculus mmu-miR-148a-3p mature miRNA
Sequence 61 - UCAGUGCACUACAGAACUUUGU - 82
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009