miRBase entry: mmu-mir-27a

Stem-loop mmu-mir-27a


Accession
MI0000578
Symbol
MGI: Mir27a
Description
Mus musculus mmu-mir-27a precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
164 open access papers mention mmu-mir-27a
(1508 sentences)

Sequence

628515 reads, 4457 reads per million, 107 experiments
uggccugaggagcAGGGCUUAGCUGCUUGUGAGCAagguccacagcaaagucgugUUCACAGUGGCUAAGUUCCGCccccuggaccc
.((((.(.((.((.(((((((((((((.(((((((.((............)).)))))))))))))))))))).)).))).)).)).

Structure
u  -  u a  a  A             U       a  uccac 
 gg cc g gg gc GGGCUUAGCUGCU GUGAGCA gg     a
 || || | || || ||||||||||||| ||||||| ||      
 cc gg c cc CG CUUGAAUCGGUGA CACUUgu cu     g
c  a  u -  c  C             -       g  gaaac 


Annotation confidence High
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Genome context
chr8: 84208672-84208758 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mmu-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-27a-5p

Accession MIMAT0004633
Description Mus musculus mmu-miR-27a-5p mature miRNA
Sequence 14 - AGGGCUUAGCUGCUUGUGAGCA - 35
Evidence experimental
cloned [5], Illumina [6-7]
Database links
Predicted targets

Mature mmu-miR-27a-3p

Accession MIMAT0000537
Description Mus musculus mmu-miR-27a-3p mature miRNA
Sequence 56 - UUCACAGUGGCUAAGUUCCGC - 76
Evidence experimental
cloned [1-2,4-5], Northern [1], Illumina [6]
Database links
Predicted targets

References

  1. PubMed ID: 12554860
    Numerous microRNPs in neuronal cells containing novel microRNAs
    "Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G"
    "RNA (2003) 9:180-186

  2. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  3. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  4. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  5. PubMed ID: 15538371
    A pancreatic islet-specific microRNA regulates insulin secretion
    "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
    "Nature (2004) 432:226-230

  6. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  7. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009