miRBase entry: mmu-mir-93

Stem-loop mmu-mir-93


Accession
MI0000581
Symbol
MGI: Mir93
Description
Mus musculus mmu-mir-93 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
104 open access papers mention mmu-mir-93
(1059 sentences)

Sequence

478848 reads, 2058 reads per million, 107 experiments
agucaugggggcucCAAAGUGCUGUUCGUGCAGGUAGuguaauuaccugaccuACUGCUGAGCUAGCACUUCCCGagcccccaggaca
.(((.(((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))).))).

Structure
a   a         -CA       -     U    G   u  aau 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
 ||| |||||||||   ||||||| ||||| |||| ||| ||   a
 cag acccccgaG   UUCACGA CGAGU CGUC Auc ca   c
a   g         CCC       U     -    -   -  guc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr5: 138165523-138165610 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-93-5p

Accession MIMAT0000540
Description Mus musculus mmu-miR-93-5p mature miRNA
Sequence 15 - CAAAGUGCUGUUCGUGCAGGUAG - 37
Evidence experimental
cloned [1-3], Northern [1], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-93-3p

Accession MIMAT0004636
Description Mus musculus mmu-miR-93-3p mature miRNA
Sequence 54 - ACUGCUGAGCUAGCACUUCCCG - 75
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 15538371
    A pancreatic islet-specific microRNA regulates insulin secretion
    "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
    "Nature (2004) 432:226-230

  4. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  5. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009