miRBase entry: rno-mir-329

Stem-loop rno-mir-329


Accession
MI0000604
Description
Rattus norvegicus rno-mir-329 precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
12 open access papers mention rno-mir-329
(20 sentences)

Sequence

41458 reads, 103 reads per million, 356 experiments
uguucgcuucugguaccggaagAGAGGUUUUCUGGGUCUCUGUUUCuuugaugagaaugaAACACACCCAGCUAACCUUUUUuucaguaucaaaucc
..........((((((.((((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))).)))))).....

Structure
uguucgcuuc      c            UU      CUC      u  ga 
          ugguac ggaagAGAGGUU  CUGGGU   UGUUUC uu  u
          |||||| ||||||||||||  ||||||   |||||| ||   
          acuaug cuuUUUUUCCAA  GACCCA   ACAAag aa  g
-----ccuaa      a            UC      --C      u  ga 


Annotation confidence High
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Comments
Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. This rat miRNA has a predicted homologue in mouse (MIR:MI0000605).

Genome context
chr6: 133862168-133862264 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-329
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-329-5p

Accession MIMAT0017031
Description Rattus norvegicus rno-miR-329-5p mature miRNA
Sequence 23 - AGAGGUUUUCUGGGUCUCUGUUUC - 46
Evidence experimental
SOLiD [2]

Mature rno-miR-329-3p

Accession MIMAT0000566
Description Rattus norvegicus rno-miR-329-3p mature miRNA
Sequence 61 - AACACACCCAGCUAACCUUUUU - 82
Evidence experimental
cloned [1], Northern [1], SOLiD [2]

References

  1. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249