miRBase entry: mmu-mir-330

Stem-loop mmu-mir-330


Accession
MI0000607
Symbol
MGI: Mir330
Description
Mus musculus mmu-mir-330 precursor miRNA
Gene family
MIPF0000200; mir-330

Literature search
17 open access papers mention mmu-mir-330
(251 sentences)

Sequence

67027 reads, 231 reads per million, 104 experiments
gacccuuuggcgaucucugccUCUCUGGGCCUGUGUCUUAGGCucuucaagauccaacgaGCAAAGCACAGGGCCUGCAGAGAgguagcgcucugcuc
........(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).

Structure
gacccuuu   -  u u           --    -    U   AG    uucaa 
        ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
        ||| || | |||||||||||  |||| |||| |||  ||||     a
        ucg cu g gauggAGAGAC  CCGG ACAC GAA  CGag     u
-------c   u  c c           GU    G    -   -A    caacc 


Annotation confidence High
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Genome context
chr7: 19181465-19181562 [+]

Database links

Mature mmu-miR-330-5p

Accession MIMAT0004642
Description Mus musculus mmu-miR-330-5p mature miRNA
Sequence 22 - UCUCUGGGCCUGUGUCUUAGGC - 43
Evidence experimental
cloned [1-2], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-330-3p

Accession MIMAT0000569
Description Mus musculus mmu-miR-330-3p mature miRNA
Sequence 61 - GCAAAGCACAGGGCCUGCAGAGA - 83
Evidence experimental
cloned [1-2], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009