miRBase entry: rno-mir-337

Stem-loop rno-mir-337


Accession
MI0000614
Description
Rattus norvegicus rno-mir-337 precursor miRNA
Gene family
MIPF0000195; mir-337

Literature search
5 open access papers mention rno-mir-337
(5 sentences)

Sequence

39513 reads, 85 reads per million, 353 experiments
aguguagugagaaguuggggggugggaaCGGCGUCAUGCAGGAGUUGAUugcacagccaUUCAGCUCCUAUAUGAUGCCUUUcuucacccccuucaa
................((((((((((((.(((((((((.(((((((((.((......)).))))))))).))))))))).))).)))))))))....

Structure
aguguagugagaaguu         -   C         C         U  ca 
                ggggggugg gaa GGCGUCAUG AGGAGUUGA ug  c
                ||||||||| ||| ||||||||| ||||||||| ||   
                ucccccacu cUU CCGUAGUAU UCCUCGACU ac  a
------------aacu         u   U         A         U  cg 


Annotation confidence High
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Genome context
chr6: 133705920-133706016 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from rno-mir-337
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-337-5p

Accession MIMAT0017035
Description Rattus norvegicus rno-miR-337-5p mature miRNA
Sequence 29 - CGGCGUCAUGCAGGAGUUGAU - 49
Evidence experimental
SOLiD [2]

Mature rno-miR-337-3p

Accession MIMAT0000577
Description Rattus norvegicus rno-miR-337-3p mature miRNA
Sequence 60 - UUCAGCUCCUAUAUGAUGCCUUU - 82
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249