miRBase entry: mmu-mir-338

Stem-loop mmu-mir-338


Accession
MI0000619
Symbol
MGI: Mir338
Description
Mus musculus mmu-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338

Literature search
33 open access papers mention mmu-mir-338
(271 sentences)

Sequence

75287 reads, 440 reads per million, 77 experiments
caacgcugcacaggccguccuccccAACAAUAUCCUGGUGCUGAGUGggugcacagugacUCCAGCAUCAGUGAUUUUGUUGaagagggcagcugcca
.......(((...((.((((((..((((((.(((((((((((((((.(........).))).))))))))).))).))))))..)))))).)))))..

Structure
caacgcu   cag  c      cc      U   -         -   G gug 
       gca   gc guccuc  cAACAA AUC CUGGUGCUG AGU g   c
       |||   || ||||||  |||||| ||| ||||||||| ||| |    
       cgu   cg cgggag  GUUGUU UAG GACUACGAC Uca u   a
-----ac   ---  a      aa      U   U         C   g gac 


Annotation confidence High
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Genome context
chr11: 120014765-120014862 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-338
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-338-5p

Accession MIMAT0004647
Description Mus musculus mmu-miR-338-5p mature miRNA
Sequence 26 - AACAAUAUCCUGGUGCUGAGUG - 47
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-338-3p

Accession MIMAT0000582
Description Mus musculus mmu-miR-338-3p mature miRNA
Sequence 61 - UCCAGCAUCAGUGAUUUUGUUG - 82
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009