Stem-loop sequence mmu-mir-339

AccessionMI0000621 (change log)
Symbol MGI:Mir339
DescriptionMus musculus miR-339 stem-loop
Gene family MIPF0000193; mir-339
Literature search

23 open access papers mention mmu-mir-339
(70 sentences)

   ----------ac       c    au c     cu  -   a      --   u 
5'             ggggugg cacu  c cuguc  cc agg gcucac  gua g
               ||||||| ||||  | |||||  || ||| ||||||  |||  
3'             ccccacc gugg  g gacag  gg ucc cgagug  cgu c
   caccugucacgu       u    cc a     -c  c   g      uc   c 
Get sequence
Deep sequencing
26718 reads, 64.8 reads per million, 108 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [1].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr5: 139369650-139369745 [-]
OTTMUST00000091859 ; RP23-205J6.1-001; intron 2
ENSMUST00000066052 ; 3110082I17Rik-001; intron 2
Database links

Mature sequence mmu-miR-339-5p

Accession MIMAT0000584
Previous IDsmmu-miR-339

16 - 


 - 38

Get sequence
Deep sequencing20597 reads, 107 experiments
Evidence experimental; cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature sequence mmu-miR-339-3p

Accession MIMAT0004649

51 - 


 - 73

Get sequence
Deep sequencing5800 reads, 103 experiments
Evidence experimental; cloned [1], Illumina [2-3]
Database links
Predicted targets


PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).