miRBase entry: mmu-mir-339

Stem-loop mmu-mir-339


Accession
MI0000621
Symbol
MGI: Mir339
Description
Mus musculus mmu-mir-339 precursor miRNA
Gene family
MIPF0000193; mir-339

Literature search
23 open access papers mention mmu-mir-339
(70 sentences)

Sequence

19403 reads, 206 reads per million, 107 experiments
acgggguggccacuaUCCCUGUCCUCCAGGAGCUCACGuaugccugccugUGAGCGCCUCGGCGACAGAGCCGguguccaccccugcacuguccac
..(((((((.((((..(.(((((..(((((.(((((((((....)))..)))))).))).)).))))).)..)))).)))))))............

Structure
----------ac       c    aU C     CU  -   A      --   u 
            ggggugg cacu  C CUGUC  CC AGG GCUCAC  Gua g
            ||||||| ||||  | |||||  || ||| ||||||  |||  
            ccccacc gugG  G GACAG  GG UCC CGAGUg  cgu c
caccugucacgu       u    CC A     -C  C   G      uc   c 


Annotation confidence High
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [1].

Genome context
chr5: 139369650-139369745 [-]

Database links

Mature mmu-miR-339-5p

Accession MIMAT0000584
Description Mus musculus mmu-miR-339-5p mature miRNA
Sequence 16 - UCCCUGUCCUCCAGGAGCUCACG - 38
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-339-3p

Accession MIMAT0004649
Description Mus musculus mmu-miR-339-3p mature miRNA
Sequence 51 - UGAGCGCCUCGGCGACAGAGCCG - 73
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009