Stem-loop rno-mir-344a-1

Accession

MI0000629

Description

Rattus norvegicus rno-mir-344a-1 precursor miRNA

Gene family

MIPF0000267; mir-344

Literature search

8 open access papers mention rno-mir-344a-1
(74 sentences)

Sequence

9284 reads, 43 reads per million, 148 experiments

gcagccaggguuuuuaccagUCAGGCUCCUGGCUAGAUUccagguaccaacugguaccUGAUCUAGCCAAAGCCUGACUGUaagcuguaaaaacaaaggaagacugc
((((((...((((((((((((((((((..(((((((((..((((((((....))))))))))))))))).))))))))))......))))))))...))....))))

Structure

    ----  agg        ------          CC         Uc        a 
gcag    cc   guuuuuac      cagUCAGGCU  UGGCUAGAU  cagguacc a
||||    ||   ||||||||      ||||||||||  |||||||||  ||||||||  
cguc    gg   caaaaaug      GUCAGUCCGA  ACCGAUCUA  GUccaugg c
    agaa  aaa        ucgaaU          -A         --        u 

Annotation confidence High

Genome context

chr1: 122309549-122309655 [-]

Mature rno-miR-344a-5p

• Accession: MIMAT0004654
• Description: Rattus norvegicus rno-miR-344a-5p mature miRNA
• Sequence: 21 - UCAGGCUCCUGGCUAGAUU - 39
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-344a-3p

• Accession: MIMAT0000592
• Description: Rattus norvegicus rno-miR-344a-3p mature miRNA
• Sequence: 59 - UGAUCUAGCCAAAGCCUGACUGU - 81
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249