miRBase entry: rno-mir-350-1

Stem-loop rno-mir-350-1


Accession
MI0000639
Description
Rattus norvegicus rno-mir-350-1 precursor miRNA
Gene family
MIPF0000245; mir-350

Literature search
3 open access papers mention rno-mir-350-1
(6 sentences)

Sequence

10396 reads, 34 reads per million, 470 experiments
agaugccuugcuccuacaagaguaaagugcacgugcuuugggacagugaggaaaauaaugUUCACAAAGCCCAUACACUUUCACccuuuaggagaguug
..........((((((.(((.((((((((.....(((((((((((.............))))).)))))).....)))))).)).))))))))).....

Structure
agaugccuug      c   a  -      cacgu      -     gugag 
          cuccua aag gu aaagug     gcuuug ggaca     g
          |||||| ||| || ||||||     |||||| |||||     a
          gaggau uuc CA UUUCAC     CGAAAC CUUgu     a
-----guuga      -   c  C      AUACC      A     aauaa 


Annotation confidence High
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Comments
Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. This rat miRNA has a predicted homologue in mouse (MIR:MI0000640). The sequence reported in [1] contains a 5' terminal A residue, which conflicts with the precursor sequence shown here.

Genome context
chr13: 43827492-43827590 [+]

Database links

Mature rno-miR-350

Accession MIMAT0000604
Description Rattus norvegicus rno-miR-350 mature miRNA
Sequence 61 - UUCACAAAGCCCAUACACUUUCAC - 84
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249