Stem-loop sequence osa-MIR156a

Accession

MI0000653 (change log)

Description

Oryza sativa miR156a stem-loop

Gene family

MIPF0000008; MIR156

Literature search

122 open access papers mention osa-MIR156a
(688 sentences)

Stem-loop

        g       -     -        a      uguu   uu     aau 
5' ggagg ugacaga agaga gugagcac cguggu    ucc  gcaua   g
   ||||| ||||||| ||||| |||||||| ||||||    |||  |||||   a
3' ccucc acugucu ucucu cacucgug gcaucg    agg  cguau   u
        -       c     u        c      ----   uu     ccg 

Deep sequencing

560111 reads, 3.86e+05 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr1: 22524147-22524246 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000653

Mature sequence osa-miR156a

• Accession: MIMAT0000618
• Sequence: 7 - ugacagaagagagugagcac - 26
• Deep sequencing: 560060 reads, 2 experiments
• Evidence: by similarity; MI0000183
• Database links:
  • RNAcentral:URS000020F5A7_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).