Stem-loop sequence osa-MIR162a

Accession

MI0000667 (change log)

Previous IDs

osa-MIR162

Description

Oryza sativa miR162a stem-loop

Gene family

MIPF0000169; MIR162_2

Literature search

29 open access papers mention osa-MIR162a
(50 sentences)

Stem-loop

        ugc    gc    u            cc     u  c    ----   gcugauccaggagcggcgaauuucuuugagaggg 
5' gguga   cugg  gcag gguuuaucgauc  uuccc gc uugu    ggc                                  u
   |||||   ||||  |||| ||||||||||||  ||||| || ||||    |||                                   
3' ccgcu   gacc  cguc ccaaauagcuag  aaggg cg aaca    ccg                                  g
        cuu    ua    u            cu     -  c    gcaa   acguuguuccugguuuuccuucuuuuuuuuucuu 

Deep sequencing

670 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr2: 23605799-23605969 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000667

Mature sequence osa-miR162a

• Accession: MIMAT0000632
• Sequence: 143 - ucgauaaaccucugcauccag - 163
• Deep sequencing: 667 reads, 2 experiments
• Evidence: by similarity; MI0000194
• Database links:
  • RNAcentral:URS000006E530_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).