Stem-loop osa-MIR164b

Accession

MI0000669

Description

Oryza sativa osa-MIR164b precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

67 open access papers mention osa-MIR164b
(297 sentences)

Sequence

2758 reads, 1921 reads per million, 2 experiments

gugcacggUGGAGAAGCAGGGCACGUGCAuuaccauccacucgccugccggccgccggccgccauugccauggaugguucuucaugugcccgucuucuccaccgagcac
((((.(((((((((((..(((((((((....((((((((...((.((.(((((...))))).))..))..))))))))....)))))))))..))))))))))).))))

Structure

    a           CA         CAuu        cuc  -c  c     g 
gugc cggUGGAGAAG  GGGCACGUG    accaucca   gc  ug cggcc  
|||| |||||||||||  |||||||||    ||||||||   ||  || ||||| c
cacg gccaccucuuc  cccguguac    ugguaggu   cg  ac gccgg  
    a           ug         uucu        -ac  uu  c     c 

Annotation confidence Not enough data

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr5: 15896163-15896271 [-]

Mature osa-miR164b

• Accession: MIMAT0000634
• Description: Oryza sativa osa-miR164b mature miRNA
• Sequence: 9 - UGGAGAAGCAGGGCACGUGCA - 29
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626