miRBase entry: osa-MIR167a

Stem-loop osa-MIR167a


Accession
MI0000676
Description
Oryza sativa osa-MIR167a precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
85 open access papers mention osa-MIR167a
(273 sentences)

Sequence

80262 reads, 55831 reads per million, 2 experiments
uagugugaaugagUGAAGCUGCCAGCAUGAUCUAgcucugauuaaucggcacuguuggcguacagucgauugacuaaucgucagaucuguguguguaaaucacuguuagAUCAUGCAUGACAGCCUCAUUUcuucacacug
(((((((((.((((((.((((.((((((((((((((..(((((.((..((((..((((((...((((....))))...))))))....))))..)).)))))..)))))))))))).)).)))).)))))).)))))))))

Structure
         u      A    C  -            uc     a  cg    --ug      uac    g 
uagugugaa gagUGA GCUG CA GCAUGAUCUAgc  ugauu au  gcac    uuggcg   aguc a
||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||  
gucacacuu UUUACU CGAC GU CGUACUAgauug  acuaa ug  ugug    gacugc   ucag u
         c      C    A  A            uc     a  ug    ucua      uaa    u 


Annotation confidence High
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Genome context
Chr12: 25476808-25476948 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR167a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR167a-5p

Accession MIMAT0000641
Description Oryza sativa osa-miR167a-5p mature miRNA
Sequence 14 - UGAAGCUGCCAGCAUGAUCUA - 34
Evidence not_experimental
Database links

Mature osa-miR167a-3p

Accession MIMAT0006780
Description Oryza sativa osa-miR167a-3p mature miRNA
Sequence 110 - AUCAUGCAUGACAGCCUCAUUU - 131
Evidence experimental
cloned [2]
Database links

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25