miRBase entry: osa-MIR167b

Stem-loop osa-MIR167b


Accession
MI0000677
Description
Oryza sativa osa-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
83 open access papers mention osa-MIR167b
(254 sentences)

Sequence

80245 reads, 55818 reads per million, 2 experiments
gugcccaagagaaagcgUGAAGCUGCCAGCAUGAUCUAacuugcagacaagaaaucagcucagcucgcugguuucgaacaggaaggcggcuagcugaggcuucuucugaguacgugaugguuagaucaugcugugacaguuucacuccuucccuguugggcac
((((((((.((.(((.(((((((((((((((((((((((((..(((((.((((.....(((((((.((((.((((......)))).)))).))))))).....))))..)).).))..))))))))))))))).).)))))))))..)))..)).))))))))

Structure
        g  -a   -c         - -               ug  - -  -a    aucag       c    g    ga 
gugcccaa ag  aag  gUGAAGCUG C CAGCAUGAUCUAacu  ca g ac  agaa     cucagcu gcug uuuc  a
|||||||| ||  |||  ||||||||| | |||||||||||||||  || | ||  ||||     ||||||| |||| ||||   
cacggguu uc  uuc  cacuuugac g gucguacuagauugg  gu c ug  ucuu     gagucga cggc gaag  c
        g  cc   cu         a u               ua  g a  ag    cuucg       u    g    ga 


Annotation confidence Not enough data
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Comments
The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context
Chr3: 30546928-30547090 [-]

Database links

Mature osa-miR167b

Accession MIMAT0000642
Description Oryza sativa osa-miR167b mature miRNA
Sequence 18 - UGAAGCUGCCAGCAUGAUCUA - 38
Evidence not_experimental
Database links

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626