Stem-loop sequence osa-MIR171a

Accession

MI0000680 (change log)

Previous IDs

osa-MIR171

Description

Oryza sativa miR171a stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

48 open access papers mention osa-MIR171a
(164 sentences)

Stem-loop

   ---    a  gc          a         c   g           ag 
5'    ggaa ga  gauauuggug gguucaauc gau auugguuuuac  c
      |||| ||  |||||||||| ||||||||| ||| |||||||||||  a
3'    ccuu cu  cuauaaccgc ccgaguuag cua ugacuaaaaug  g
   ucu    -  --          g         u   -           gu 

Deep sequencing

575 reads, 300 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

• Coordinates (MSU7): Chr6: 25891132-25891227 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0000680

Mature sequence osa-miR171a

• Accession: MIMAT0000645
• Sequence: 67 - ugauugagccgcgccaauauc - 87
• Deep sequencing: 569 reads, 2 experiments
• Evidence: by similarity; MI0000214
• Database links:
  • RNAcentral:URS00002B5799_39947

References

1. PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).