Stem-loop sequence mmu-mir-9-3

Accession

MI0000721 (change log)

Symbol

MGI:Mir9-3

Description

Mus musculus miR-9-3 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

208 open access papers mention mmu-mir-9-3
(1076 sentences)

Stem-loop

   g    cc       -  c               g     gu  ca 
5'  gagg  cguuucu cu uuugguuaucuagcu uauga  gc  c
    ||||  ||||||| || ||||||||||||||| |||||  ||   
3'  cucu  guaaaga ga aagccaauagaucga auacu  cg  a
   a    ca       u  -               a     gc  ag 

Deep sequencing

4165806 reads, 8.81e+03 reads per million, 103 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 79505264-79505353 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000113394 ; RP23-207N5.1-003; intron 1

  OTTMUST00000113395 ; RP23-207N5.1-004; intron 1

  OTTMUST00000113396 ; RP23-207N5.1-001; intron 1

  OTTMUST00000113397 ; RP23-207N5.1-005; intron 1

  ENSMUST00000182937 ; AI854517-005; intron 1

  ENSMUST00000181511 ; AI854517-001; intron 1

  ENSMUST00000183043 ; AI854517-004; intron 1

  ENSMUST00000182495 ; AI854517-003; intron 1

Clustered miRNAs

< 10kb from mmu-mir-9-3

• mmu-mir-9-3: chr7: 79505264-79505353 [+]
• mmu-mir-9b-3: chr7: 79505279-79505336 [-]

Database links

• EntrezGene:Mirn9-3
• MGI:Mir9-3
• RNAcentral:URS000075D147_10090
• miRBase Tracker:MI0000721

Mature sequence mmu-miR-9-5p

• Accession: MIMAT0000142
• Previous IDs: mmu-miR-9
• Sequence: 16 - ucuuugguuaucuagcuguauga - 38
• Deep sequencing: 12049920 reads, 101 experiments
• Evidence: experimental; cloned [1-2,4], Illumina [5-6]
• Database links:
  • RNAcentral:URS00004208C5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-9-5p
  • miRDB:mmu-miR-9-5p
  • microrna.org:mmu-miR-9-5p

Mature sequence mmu-miR-9-3p

• Accession: MIMAT0000143
• Previous IDs: mmu-miR-9*
• Sequence: 55 - auaaagcuagauaaccgaaagu - 76
• Deep sequencing: 447406 reads, 82 experiments
• Evidence: experimental; cloned [1,4], Illumina [5-6]
• Database links:
  • RNAcentral:URS00003496BE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-9-3p
  • miRDB:mmu-miR-9-3p
  • microrna.org:mmu-miR-9-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:15538371 "A pancreatic islet-specific microRNA regulates insulin secretion" Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M Nature. 432:226-230(2004).
3. PMID:15634332 "New human and mouse microRNA genes found by homology search" Weber MJ FEBS J. 272:59-73(2005).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
6. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).