miRBase entry: mmu-mir-381

Stem-loop mmu-mir-381


Accession
MI0000798
Symbol
MGI: Mir381
Description
Mus musculus mmu-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
31 open access papers mention mmu-mir-381
(249 sentences)

Sequence

211186 reads, 1413 reads per million, 81 experiments
uacuuaaAGCGAGGUUGCCCUUUGUAUAUUcgguuuauugacauggaaUAUACAAGGGCAAGCUCUCUGUgagua
((((((.((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).)).))))))

Structure
      a  C   G        U        g  uua 
uacuua AG GAG UUGCCCUU GUAUAUUc gu   u
|||||| || ||| |||||||| |||||||| ||    
augagU UC CUC AACGGGAA CAUAUaag ua   u
      G  U   G        -        g  cag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 109726822-109726896 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from mmu-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-381-5p

Accession MIMAT0017081
Description Mus musculus mmu-miR-381-5p mature miRNA
Sequence 8 - AGCGAGGUUGCCCUUUGUAUAUU - 30
Evidence experimental
Illumina [4]
Database links
Predicted targets

Mature mmu-miR-381-3p

Accession MIMAT0000746
Description Mus musculus mmu-miR-381-3p mature miRNA
Sequence 49 - UAUACAAGGGCAAGCUCUCUGU - 70
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 15538371
    A pancreatic islet-specific microRNA regulates insulin secretion
    "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
    "Nature (2004) 432:226-230

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009