miRBase entry: mmu-mir-335

Stem-loop mmu-mir-335


Accession
MI0000817
Symbol
MGI: Mir335
Description
Mus musculus mmu-mir-335 precursor miRNA
Gene family
MIPF0000196; mir-335

Literature search
65 open access papers mention mmu-mir-335
(342 sentences)

Sequence

203593 reads, 2669 reads per million, 93 experiments
ucuuuugggcgggggUCAAGAGCAAUAACGAAAAAUGUuuguuuuucguaaaccgUUUUUCAUUAUUGCUCCUGACCcccucucauggguuauagcca
.....((((.((((((((.(((((((((.((((((((...((((.....)))))))))))).))))))))).)))))))).))))..(((....))).

Structure
--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc cccCCAGU CUCGUUAUU CUUUUUgc   caaa g
accgauauugggu    u        C         A        ---    u 


Annotation confidence High
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Genome context
chr6: 30741299-30741396 [+]

Database links

Mature mmu-miR-335-5p

Accession MIMAT0000766
Description Mus musculus mmu-miR-335-5p mature miRNA
Sequence 16 - UCAAGAGCAAUAACGAAAAAUGU - 38
Evidence experimental
cloned [3], Illumina [5-6]
Database links
Predicted targets

Mature mmu-miR-335-3p

Accession MIMAT0004704
Description Mus musculus mmu-miR-335-3p mature miRNA
Sequence 56 - UUUUUCAUUAUUGCUCCUGACC - 77
Evidence experimental
cloned [3], Illumina [5-6]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 15634332
    New human and mouse microRNA genes found by homology search
    "Weber MJ"
    "FEBS J (2005) 272:59-73

  5. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  6. PubMed ID: 17687032
    Competing interactions between micro-RNAs determine neural progenitor survival and proliferation after ethanol exposure: evidence from an ex vivo model of the fetal cerebral cortical neuroepithelium
    "Sathyan P, Golden HB, Miranda RC"
    "J Neurosci (2007) 27:8546-8557