miRBase entry: rno-mir-19a

Stem-loop rno-mir-19a


Accession
MI0000849
Description
Rattus norvegicus rno-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
38 open access papers mention rno-mir-19a
(264 sentences)

Sequence

15777 reads, 64 reads per million, 465 experiments
gcagcccucuguUCGUUUUGCAUAGUUGCACUacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((.(((((((((((((((((((((.......))))...))))))..))))))))))).))))).)).))))

Structure
    c  u     C           --      ---    ag 
gcag cc cuguU GUUUUGCAUAG  UUGCAC   Uaca  a
|||| || ||||| |||||||||||  ||||||   ||||  a
cguc gg gguAG CAAAACGUAUC  AACGUG   augu  g
    c  u     U           UA      Uug    aa 


Annotation confidence High
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Genome context
chr15: 100180162-100180243 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-19a-5p

Accession MIMAT0017098
Description Rattus norvegicus rno-miR-19a-5p mature miRNA
Sequence 13 - UCGUUUUGCAUAGUUGCACU - 32
Evidence experimental
SOLiD [2]

Mature rno-miR-19a-3p

Accession MIMAT0000789
Description Rattus norvegicus rno-miR-19a-3p mature miRNA
Sequence 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249