miRBase entry: rno-mir-93

Stem-loop rno-mir-93


Accession
MI0000880
Description
Rattus norvegicus rno-mir-93 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
29 open access papers mention rno-mir-93
(112 sentences)

Sequence

436661 reads, 438 reads per million, 499 experiments
agucaugggggcucCAAAGUGCUGUUCGUGCAGGUAGugcauugccugaccuACUGCUGAGCUAGCACUUCCCGAgcccccaggaca
.(((.(((((((((..((((((((((((.((((.(((..((.....))..)))))))))))).)))))))...))))))))).))).

Structure
a   a         -CA       -     U    G   ug  u 
 guc ugggggcuc   AAGUGCU GUUCG GCAG UAG  ca u
 ||| |||||||||   ||||||| ||||| |||| |||  || g
 cag acccccgAG   UUCACGA CGAGU CGUC Auc  gu c
a   g         CCC       U     -    -   ca  c 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 19307543-19307629 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-93-5p

Accession MIMAT0000817
Description Rattus norvegicus rno-miR-93-5p mature miRNA
Sequence 15 - CAAAGUGCUGUUCGUGCAGGUAG - 37
Evidence experimental
cloned [1-3], SOLiD [4]

Mature rno-miR-93-3p

Accession MIMAT0017109
Description Rattus norvegicus rno-miR-93-3p mature miRNA
Sequence 53 - ACUGCUGAGCUAGCACUUCCCGA - 75
Evidence experimental
SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68