Stem-loop rno-mir-100

Accession

MI0000885

Description

Rattus norvegicus rno-mir-100 precursor miRNA

Literature search

22 open access papers mention rno-mir-100
(147 sentences)

Sequence

916584 reads, 866 reads per million, 488 experiments

ccuguugccacaAACCCGUAGAUCCGAACUUGUGcugaccaugcacaCAAGCUUGUGUCUAUAGGUaugugucuguuagg
((((....((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).....))))

Structure

    -uugc    A   C      C   A      c  ac 
ccug     caca ACC GUAGAU CGA CUUGUG ug  c
||||     |||| ||| |||||| ||| |||||| ||   
ggau     gugu UGG UAUCUG GUU GAACac ac  a
    ugucu    a   A      U   C      -  gu 

Annotation confidence Medium

Genome context

chr8: 45746948-45747027 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-100

Mature rno-miR-100-5p

• Accession: MIMAT0000822
• Description: Rattus norvegicus rno-miR-100-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAACUUGUG - 34
• Evidence: experimental ; cloned [1-2], Northern [1], SOLiD [3]

Mature rno-miR-100-3p

• Accession: MIMAT0017112
• Description: Rattus norvegicus rno-miR-100-3p mature miRNA
• Sequence: 48 - CAAGCUUGUGUCUAUAGGU - 66
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249