miRBase entry: rno-mir-101a

Stem-loop rno-mir-101a


Accession
MI0000886
Description
Rattus norvegicus rno-mir-101a precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
23 open access papers mention rno-mir-101a
(181 sentences)

Sequence

1619038 reads, 2456 reads per million, 509 experiments
ugcccuggcUCAGUUAUCACAGUGCUGAUGCuguccauucuaaaggUACAGUACUGUGAUAACUGAAggauggca
((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....))))

Structure
    cuggc                  A    gucca 
ugcc     UCAGUUAUCACAGUGCUG UGCu     u
||||     |||||||||||||||||| ||||      
acgg     AGUCAAUAGUGUCAUGAC AUgg     u
    uaggA                  -    aaauc 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
chr5: 120168437-120168511 [-]

Database links

Mature rno-miR-101a-5p

Accession MIMAT0004726
Description Rattus norvegicus rno-miR-101a-5p mature miRNA
Sequence 10 - UCAGUUAUCACAGUGCUGAUGC - 31
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-101a-3p

Accession MIMAT0000823
Description Rattus norvegicus rno-miR-101a-3p mature miRNA
Sequence 47 - UACAGUACUGUGAUAACUGAA - 67
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249