miRBase entry: rno-mir-107

Stem-loop rno-mir-107


Accession
MI0000890
Description
Rattus norvegicus rno-mir-107 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
29 open access papers mention rno-mir-107
(251 sentences)

Sequence

368037 reads, 432 reads per million, 503 experiments
uucucucugcuuuaAGCUUCUUUACAGUGUUGCCUUGUggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacagagagc
((((((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))))).

Structure
-      c      --a    U  U           C   U   a 
 uucucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 |||||| ||||||   |||| || ||||||||||| ||| ||| g
 gagaga acgaaA   UCGG GA AUGUUACGACG Aac uug g
c      c      CUA    -  C           -   -   a 


Annotation confidence High
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Genome context
chr1: 253128250-253128336 [-]

Database links

Mature rno-miR-107-5p

Accession MIMAT0017115
Description Rattus norvegicus rno-miR-107-5p mature miRNA
Sequence 15 - AGCUUCUUUACAGUGUUGCCUUGU - 38
Evidence experimental
SOLiD [2]

Mature rno-miR-107-3p

Accession MIMAT0000826
Description Rattus norvegicus rno-miR-107-3p mature miRNA
Sequence 52 - AGCAGCAUUGUACAGGGCUAUCA - 74
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249