miRBase entry: rno-mir-127

Stem-loop rno-mir-127


Accession
MI0000899
Description
Rattus norvegicus rno-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127

Literature search
26 open access papers mention rno-mir-127
(403 sentences)

Sequence

24972601 reads, 19081 reads per million, 494 experiments
uuugaucacugucuccagccugCUGAAGCUCAGAGGGCUCUGAUUcagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucggaagucucaucauc
..((((.(((...(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))))))...))))..

Structure
uu    --c   guc   a   u   G         G  C      --  a 
  ugau   acu   ucc gcc gCU AAGCUCAGA GG UCUGAU  Uc g
  ||||   |||   ||| ||| ||| ||||||||| || ||||||  || a
  acua   uga   agg ugg CGG UUCGAGUCU CC AGGCUa  ag a
cu    cuc   ---   c   U   -         G  U      cu  a 


Annotation confidence High
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Genome context
chr6: 133713430-133713526 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from rno-mir-127
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-127-5p

Accession MIMAT0017117
Description Rattus norvegicus rno-miR-127-5p mature miRNA
Sequence 23 - CUGAAGCUCAGAGGGCUCUGAUU - 45
Evidence experimental
SOLiD [4]

Mature rno-miR-127-3p

Accession MIMAT0000833
Description Rattus norvegicus rno-miR-127-3p mature miRNA
Sequence 57 - UCGGAUCCGUCUGAGCUUGGCU - 78
Evidence experimental
cloned [1-3], SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 14691248
    Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
    "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
    "Proc Natl Acad Sci U S A (2004) 101:360-365

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68