miRBase entry: rno-mir-129-1

Stem-loop rno-mir-129-1


Accession
MI0000902
Description
Rattus norvegicus rno-mir-129-1 precursor miRNA
Gene family
MIPF0000073; mir-129

Literature search
29 open access papers mention rno-mir-129-1
(158 sentences)

Sequence

156640 reads, 236 reads per million, 401 experiments
uggguCUUUUUGCGGUCUGGGCUUGCuguucucuccacaguagucaggAAGCCCUUACCCCAAAAAGuaucu
.(((((((((((.(((..((((((.(((..((((....)).)).))).))))))..))).))))))).))))

Structure
u    -       C   CU      G   uu  -  c 
 gggu CUUUUUG GGU  GGGCUU Cug  cu cu c
 |||| ||||||| |||  |||||| |||  || ||  
 ucua GAAAAAC CCA  CCCGAA gac  ga ga a
-    u       C   UU      g   -u  u  c 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
chr4: 56301726-56301797 [+]

Database links

Mature rno-miR-129-5p

Accession MIMAT0000600
Description Rattus norvegicus rno-miR-129-5p mature miRNA
Sequence 6 - CUUUUUGCGGUCUGGGCUUGC - 26
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-129-1-3p

Accession MIMAT0017120
Description Rattus norvegicus rno-miR-129-1-3p mature miRNA
Sequence 49 - AAGCCCUUACCCCAAAAAG - 67
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68