Stem-loop sequence rno-mir-132

Accession

MI0000905 (change log)

Description

Rattus norvegicus miR-132 stem-loop

Gene family

MIPF0000065; mir-132

Literature search

82 open access papers mention rno-mir-132
(573 sentences)

Stem-loop

   cc  cccc    -  c a    a         uuc          -g     
5'   gc    gcgu cu c gggc accguggcu   gauuguuacu  uggg 
     ||    |||| || | |||| |||||||||   ||||||||||  ||| a
3'   cg    cgca ga g cccg ugguaccga   cugacaaugg  gcca 
   cu  cacc    c  c c    c         cau          ag     

Deep sequencing

485249 reads, 290 reads per million, 483 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr10: 62014995-62015095 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-132

• rno-mir-212: chr10: 62014702-62014812 [+]
• rno-mir-132: chr10: 62014995-62015095 [+]

Database links

• EntrezGene:Mir132
• miRBase Tracker:MI0000905

Mature sequence rno-miR-132-5p

• Accession: MIMAT0017123
• Previous IDs: rno-miR-132*
• Sequence: 23 - accguggcuuucgauuguuacu - 44
• Deep sequencing: 47778 reads, 336 experiments
• Evidence: experimental; SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-132-5p
  • miRDB:rno-miR-132-5p

Mature sequence rno-miR-132-3p

• Accession: MIMAT0000838
• Previous IDs: rno-miR-132
• Sequence: 59 - uaacagucuacagccauggucg - 80
• Deep sequencing: 437411 reads, 482 experiments
• Evidence: experimental; cloned [1-4], SOLiD [5]
• Predicted targets:
  • TargetScanVert:rno-miR-132-3p
  • miRDB:rno-miR-132-3p
  • microrna.org:rno-miR-132-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
5. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).