Stem-loop rno-mir-132

Accession

MI0000905

Description

Rattus norvegicus rno-mir-132 precursor miRNA

Literature search

82 open access papers mention rno-mir-132
(583 sentences)

Sequence

366111 reads, 264 reads per million, 474 experiments

ccgcccccgcgucuccagggcaACCGUGGCUUUCGAUUGUUACUgugggaaccggaggUAACAGUCUACAGCCAUGGUCGccccgcagcacgcccacgcuc
..((....((((((.(.((((.(((((((((...((((((((((.(((...)))..))))))))))...))))))))).)))).).)).))))....))..

Structure

cc  cccc    -  c a    a         UUC          -g   g 
  gc    gcgu cu c gggc ACCGUGGCU   GAUUGUUACU  ugg  
  ||    |||| || | |||| |||||||||   ||||||||||  ||| a
  cg    cgca ga g cccG UGGUACCGA   CUGACAAUgg  gcc  
cu  cacc    c  c c    C         CAU          ag   a 

Annotation confidence High

Genome context

chr10: 62014995-62015095 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-132

Mature rno-miR-132-5p

• Accession: MIMAT0017123
• Description: Rattus norvegicus rno-miR-132-5p mature miRNA
• Sequence: 23 - ACCGUGGCUUUCGAUUGUUACU - 44
• Evidence: experimental ; SOLiD [5]

Mature rno-miR-132-3p

• Accession: MIMAT0000838
• Description: Rattus norvegicus rno-miR-132-3p mature miRNA
• Sequence: 59 - UAACAGUCUACAGCCAUGGUCG - 80
• Evidence: experimental ; cloned [1-4], SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


5. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714