miRBase entry: rno-mir-134

Stem-loop rno-mir-134


Accession
MI0000907
Description
Rattus norvegicus rno-mir-134 precursor miRNA
Gene family
MIPF0000112; mir-134

Literature search
33 open access papers mention rno-mir-134
(110 sentences)

Sequence

42938 reads, 77 reads per million, 399 experiments
cagggugUGUGACUGGUUGACCAGAGGGGcgugcacuuuguucaccCUGUGGGCCACCUAGUCACCAAcccuc
.(((((..((((((((.((.(((.((((..(.(((...))).).)))).)))..)).))))))))..))))).

Structure
c     gU        U  -A   G    Gc u   c 
 agggu  GUGACUGG UG  CCA AGGG  g gca  
 |||||  |||||||| ||  ||| ||||  | ||| u
 ucccA  CACUGAUC AC  GGU UCcc  c ugu  
c     AC        C  CG   G    -a u   u 


Annotation confidence High
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Genome context
chr6: 133884547-133884619 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from rno-mir-134
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-134-5p

Accession MIMAT0000840
Description Rattus norvegicus rno-miR-134-5p mature miRNA
Sequence 8 - UGUGACUGGUUGACCAGAGGGG - 29
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-134-3p

Accession MIMAT0017125
Description Rattus norvegicus rno-miR-134-3p mature miRNA
Sequence 47 - CUGUGGGCCACCUAGUCACCAA - 68
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249