miRBase entry: rno-mir-135a

Stem-loop rno-mir-135a


Accession
MI0000908
Description
Rattus norvegicus rno-mir-135a precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
23 open access papers mention rno-mir-135a
(68 sentences)

Sequence

34711 reads, 91 reads per million, 304 experiments
agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAucguaauaaagucucaUGUAGGGAUGGAAGCCAUGAAAuacauugugaaaauuca
.((....(((((....(((.((((((((((((.((((((((((((.(........)..)))))))))))))))))))))))).)))...)))))...)).

Structure
a  uaaa     ucua   c            U            -u gua 
 ga    uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA  c   a
 ||    |||||    ||| |||||||||||| ||||||||||||  |    
 cu    aagug    cau AAGUACCGAAGG UAGGGAUGUacu  g   u
a  -uaa     -uua   A            -            cu aaa 


Annotation confidence High
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Genome context
chr7: 32894877-32894976 [-]

Database links

Mature rno-miR-135a-5p

Accession MIMAT0000841
Description Rattus norvegicus rno-miR-135a-5p mature miRNA
Sequence 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-135a-3p

Accession MIMAT0004732
Description Rattus norvegicus rno-miR-135a-3p mature miRNA
Sequence 62 - UGUAGGGAUGGAAGCCAUGAAA - 83
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 16471176
    Assessment of the microRNA system in salt-sensitive hypertension
    "Naraba H, Iwai N"
    "Hypertens Res (2005) 28:819-826